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Can auxiliary sites accelerate enzymatic reactions?

TYPEStatistical & Bio Seminar
Speaker:Prof. Saar Rahav
Affiliation:Technion, Faculty of Chemistry
Date:22.12.2024
Time:11:30
Location:Lidow Nathan Rosen (300)
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Abstract:

Recent work suggests that inactive binding sites may play a role in the kinetics of molecular machines and motors. We study if the rate at which fuel molecules reach a catalytic site and react there can be enhanced by the presence of nearby auxiliary sites. A simple model of the flow of molecules from a reservoir to the site is defined, and its steady state is analyzed. Two possible mechanisms of rate acceleration have been identified. The first mechanism is called molecular storage. In it the auxiliary site stores a fuel molecule and releases it when the nearby active site is empty. In the second mechanism, the escape of molecules from the active site is blocked. We discuss some aspects of the thermodynamics of the molecular storage mechanism. Our results demonstrate an interesting and largely unexplored out-of-equilibrium phenomenon.